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Molecular Biology Book from C.H.I.P.S.

Handbook of Computational Molecular Biology
edited by Srinivas Aluru

Handbook of Computational Molecular Biology details the algorithms necessary to solve novel problems and manage the massive amounts of data housed in biological databases throughout the world.

Features:

  • Presents the first comprehensive distillation of accumulated knowledge in computational biology
  • Links each topic to applications in molecular biology while building on fundamental concepts
  • Takes an algorithmic point of view for immediate implementation and easy reference
  • Includes numerous illustrations to highlight the discussion as well as many references for more in-depth information

Contents

Sequence Alignments

  • Pairwise Sequence Alignments
  • Spliced Alignment and Similarity-Based Gene Recognition
  • Multiple Sequence Alignment
  • Parametric Sequence Alignment

String Data Structures

  • Lookup Tables, Suffix Trees and Suffix Arrays
  • Suffix Tree Applications in Computational Biology
  • Enhanced Suffix Arrays and Applications

Genome Assembly and EST Clustering

  • Computational Methods for Genome Assembly
  • Assembling the Human Genome
  • Comparative Methods for Sequence Assembly
  • Information Theoretic Approach to Genome Reconstruction
  • Expressed Sequence Tags: Clustering and Applications
  • Algorithms for Large-Scale Clustering and Assembly of Biological Sequence Data

Genome-Scale Computational Methods

  • Comparisons of Long Genomic Sequences: Algorithms and Applications
  • Chaining Algorithms and Applications in Comparative Genomics
  • Computational Analysis of Alternative Splicing
  • Human Genetic Linkage Analysis
  • Combinatorial Methods for Haplotype Inference

Phylogenetics

  • An Overview of Phylogeny Reconstruction
  • Consensus Trees and Supertrees
  • Large-Scale Phylogenetic Analysis
  • High-Performance Phylogeny Reconstruction

Microarrays and Gene Expression Analysis

  • Microarray Data: Annotation, Storage, Retrieval and Communication
  • Computational Methods for Microarray Design
  • Clustering Algorithms for Gene Expression Analysis
  • Biclustering Algorithms: A Survey
  • Identifying Gene Regulatory Networks from Gene Expression Data
  • Modeling and Analysis of Gene Networks Using Feedback Control Theory

Computational Structural Biology

  • Predicting Protein Secondary and Supersecondary Structure
  • Protein Structure Prediction with Lattice Models
  • Protein Structure Determination via NMR Spectral Data
  • Geometric Processing of Reconstructed 3D Maps of Molecular Complexes
  • In Search of Remote Homolog
  • Biomolecular Modeling using Parallel Supercomputers

Bioinformatic Databases and Data Mining

  • String Search in External Memory: Data Structures and Algorithms
  • Index Structures for Approximate Matching in Sequence Databases
  • Algorithms for Motif Search
  • Data Mining in Computational Biology

Index

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Handbook of Computational Molecular Biology
edited by Srinivas Aluru
2005 1104 pages $138.95 + shipping
Texas residents please add 6.75 % sales tax

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